States lab home

About the group

Research projects

• Gene expression regulation
• Macrophages and innate immunity
• Proteome Informatics
• Data integration and automated natural language procesing

People

Collaborators

News and events

Lab meetings

Rotation opportunities

Recruiting

Software and data

Contact and travel information

Current Projects

• Computational modeling of gene expression regulation
  • Macrophages and innate immunity
  • CSF-1 signal transduction
  • NF kappa B
  • c-myc
  • microRNAs
  • chromatin structure and dynamics
• Computational proteomics
  • Statistical assessment of data reliability in proteomics
  • Compact Protein Clusters
  • Proteome data organization, integration and retrieval
  • Human Proteome Organization Plasma Proteome Project (HUPO PPP)
  • Proteomics Alliance for Cancer
  • NCI Mouse models for cancer consortium
  • National Research Resource for Pathways and Proteomics Technology
• Model based data integration in molecular biology
  • Representing provenance and confidence in complex information networks
  • National Research Resource for Pathways and Proteomics Technology
  • National Center for Integrative Biomedical Informatics

Previous work in the group

• Transcript Reconstruction and Analysis
  
• Genome Contig Assembly and Analysis
  
• MegaClass Sequence Classification
  
• Nucleosome Binding Modeling
• CONPRO